I had the TSB done. The rear ducts you speak of do not have filters. They are originally installed with the "angled" part of the duct facing down. The TSB does include a new design which has the "angle" now facing up, as to not be as directly in the upward draft of possible exhaust from the rear of the vehicle. They will also use a sealant and seal up most gaps and seams that "may or may not" allow exhaust in the cabin.
To be honest, I think Ford has no clue what they are doing with this TSB because it doesn't completely fix the problem. This is a motion the are going through on the advice of counsel; so when the huge class action happens, they can say they tried to fix the problem in good faith and mitigate any punitive damages.
There are too many "let's try this and that" fixes in the TSB.....such as the small plastic inserts for the rear hatch holes/drains, the haphazard application of sealant, new upside down vents, and the reprograming the A/C to start up in recirculation mode. With all that, it's the same old smell, just not as bad.
My fix.... I try to leave the rear A/C off if i can. It never happens when it is off.