I have had 2 Autos and 2 Sticks, and there is nothing like a Floor Shift Manual. Column shifts suck, but I had an '87 F150 with a 4 Speed Granny that would TOW! and a T handle shifter felt just right!
Gas milage is better (it takes some of the torque in the engine just to run the auto tranny), plus more power put to use. You get a better feel for what the car is actually doing in my opinion.
I guess I am also looking at the fact that I just destroyed the Auto on my EX wast week during trip to Kentucky ( in the OH MY GOD! Mountains of West Va.).