Thank you gentlemen for your comments! They definitely help us understand the design!
Any preventative measures can we take to prevent the transmission from being damaged by leaking coolant?
The pressure of the trans fluid is far higher than the coolant, easily over 100psi, versus about 16psi max for the coolant. That internal trans cooler is hardly ever heard of to fail. When it ever might fail, the ATF is going to go into the radiator while running, but when shut off, the coolant pressure will remain for a long while, and some will be pushed inside the transmission.
I prefer far cooler fluid temps than OEM, they want the coolant a little above 200*, and the ATF they expect to be very close to the same. Having the ATF go through the radiator, basically insures the ATF cannot run cooler than that. I want coolant to run around 175*, both for best power, and more margin for safety of the coolant overheating. Transmissions are killed by heat and malfunctioning of the VB and shift devices, lowering the temps is always helpful until they can get well below 150*.
The OEM 5R transmissions have an internal thermostat which doesn't allow ATF out to the cooling lines, until it reaches about 155*. That's likely inside most modern transmissions now.
If you install a very large external ATF cooler, then you can bypass the radiator cooler. A thermostat would be very beneficial if someone made one. There are many versions for oil coolers, they open at about 180* normally. I found one that is made with a typical thermostat "pill" inside it, the bimetal spring assembly in them. I got that but couldn't on first attempt unscrew the access cover. The cover is a hex shape outside, but less than 1/8" thick. I got a marine thermostat to cut apart for the pill, which is 145* rated. That would make an excellent thermostat control for the ATF cooling. I'd like to get that done right, and use that for all of my project vehicles. The Super Duty Ford trucks have several various sizes of ATF coolers. Members here have had good success with the long version of those, which can fit along the bottom of the Explorer radiator in front of it.