The ABS has passages in it which are unused most of the time. Bleeding the brakes normally just pushes fluid through the normal pathways, not into the deep ABS valves, which have to be opened at the same time as bleeding(if there is air in them).
So it's not a sure thing that you have air in the ABS, but it is possible. But still, try to keep any more air from entering the lines leading to or from the ABS. Get a large container of a top brand fluid from the local store, and get ready to bleed all of the lines fully. You will have better brakes than originally, the discs and new fluid might be notable. Put on some good rear pads while doing the conversion, Ford makes some great pads for the 1995-01 4dr's. Check with Rock Auto, and look at all of the OEM pads, the best versions are listed as HD or SD(severe duty).