Since the pics aren't in this thread anymore for checking the wires, here's what I did:
I can't remember, but I believe I unwrapped the wires enough to gain access. When I have gone searching in there I had an idea of what wire I was looking for. It was the thinner black wire. I located the thinner black wire and gently tugged on that wire on the door side. The wire was pulled toward me and out of the harness. I then went inside the vehicle and gently tugged on the thinner black wire and was able to pull it inside the vehicle. I then spliced a length of wire to the 2 ends, completing the circuit. I then gently pulled the excess into the door.
Like I said before, when I was having the following symptoms, it turned out to be the thinner black wire that was broken:
The dome lights would stay on until the battery saver feature turned them off, the accessory delay wasn't working, the driver side puddle light didn't work, the keypad on the door would set off the alarm when I pressed it, the door ajar light would flash and beep at highway speeds, the radio would shut off as soon as I turned the key off, the alarm would beep twice when I armed it.
I recommend following the above steps with the thinner black wire.