The easiest 4.0L OHV computer and system to use with the 2.9L to 4.0L conversion is 91-92 Explorer.
The BEST system to use is the 93 4.0L Ranger/Explorer intakes, sensors, and PCM.
Converting the 2.9L TVR to OBD-II would be pointless at this point UNLESS your 97 engine had the intakes, sensors, etc installed for the later model OBD-II computer.
I am going to assume your 2.9L equipped car currently has the car version of the 2.9L engine? Does it have a dual plane butterfly at the throttle body? What I am getting at is it does not have the truck style 2.9L upper and lower intakes, it has the Merkur scorpio stlye (Ford Cosworth? I want to know more about your 2.9L, it is EF injected correct??. These cars seem similar to the Sunbeam we had here in the US, though the only ones of those I have seen are 289 V8 cars)
If so this engine is speed density and uses a distributor ignition.
All you basically have to do to modify your 2.9L wiring is to add the Mass air flow sensor and DIS ignition on top of the 2.9L's harness, then use the 4.0L computer, BUT with the 2.9L intakes IF POSSIBLE.
OR
You can yank all the 2.9L stuff, everything and use the 93 harness from a Ranger/Explorer /Aerostar) anything 1993 with a 4.0L OHV in it.
the reason I like the 93 over the 91-92 and the 94 EEC-IV computer is there is no EGR, it has dual 02 sensors, and the power distribution portion of the wiring is far superior to the 91-92 (simplified and cleaner). It should not be difficult to find everything you need online, its just a matter of getting it all complete from ONE donor if possible to avoid complications. I would shoot for upper and lower intakes, all engine sensors, accessories, wiring harness (including trans and power distribution)
I did a 2.9L to 4.0L OHV conversion years ago into my bronco. I have done the wiring for many. Each one is different really because the recipient and the donor are always slightly different years, etc.
Do you have pictures of your 2.9 engine in the car?
What trans does it use?
Do you pictures of your new 4.0L?
This little car is going to have ALOT of torque when you are done with this....I suggested using the 2.9L intakes to kind of help make the power band a little more car like thehn the 97 4.0L truck version will put out. All your power comes under 2500 rpm, great for a truck, awkward in a car depending on the trans. the 2.9L was a rev happy engine, the OHV 4.0L can be made into one.