The electronic features of cars are great, but they shouldn't be so intertwined that nobody can alter them without a serious engineering degree and huge experience with the specific vehicle.
The Coyote system is called the Control Pack, I guess that would find it fast in a search. That removes the connections to the many main car electronics, and let's the engine go into anything. I just read recently that it's $2k, that's a lot if that's accurate.
The SOHC 4.0 V6 is a great engine when it's right, but it requires special attention with the timing system more often than anyone wants to do it. The care for the oil changes, quality etc, that lengthens the lifespan of the SOHC, or it kills it. Some people get 250k from them, while others have had it fail before it hit 50k. The design of the tensioners and guides is poor, and a this point nothing is going to change.
I would hunt a SOHC that you can find with a reliable condition, which is saying a ton. My 99 is still solid at 153k, but with the trans down, I will be doing the whole timing set stuff again. It should be fine for another 75-150k after that, depending on the care for the oil and air filter. I hope I can sell it to a coworker since I'm retiring before needing it again.