Bypassing the amp is not that hard, you are right about the location, but you might not need or want to do it depending on your situation. When I put in my headunit I didn't know anything about the factory amp and was quite pleased with the sound. Then I read about bypassing the amp so I did it and this is what I found. The factory sub no longer worked, which I knew would happen, but also the head unit was working much harder to put out the sound, especially bass to the door speakers. I actually switched it back to the factory setup with the new headunit. The only problem with this is that you start getting distortion from the factory amp before your head unit is maxed out because the factory headunit puts out a low level signal. However I got better and louder sound with the factory amp before distortion than I did with it bypassed. Now if you're amping all of your speakers, which I have done now, then you don't need the factory amp at all and you just want to tap into the speaker wires back at the amp, which isn't hard, I mananged to keep the whole harness intact. Let me know what exactly you are doing and I'll give you some more details.