Kinda figured it would. As suggested earlier, I would try going through 1 step at a time. Start by taking wheel off and replacing, without touching the brakes. If noise is not eliminated, then try removing the caliper and replacing without taking the pads off or making any other changes to it. Just keep working your way through one at a time and stop as soon as the noise is gone. That will narrow down the issue.
I still suspect either 1. the caliper is not working correctly or 2. the slightly warped rotor is working a little loose from the hub creating noise moving against the hub and lugs or 3. the hub itself crapped out or was defective when you installed it.
edit - Is it possible the rotor is being pushed just enough to contact either the dust shield or the caliper bracket when the brake is applied? If you look at the bracket make sure the rotor is centered in it, if not it may not be completely seated on the hub or possibly the bracket ended up slightly crooked when you reassembled after the hub replacement.