A body lift can affect engine temps.
The one thing that the body lift can do is change the air flow to the clutch fan.
The air flowing from ABOVE the radiator is what operates the clutch fan. The fan kicks on from the temps of the flow of air passing over its center. When it reaches a certain temp, the fluid in the center of the fan body is released when the spring heats up and opens the valve, then centrifugal force takes over and kicks the fan on. When the ambient temp around the spring steel valve is cooled, it closes and the fluids return to the body, thus shutting the fan off.
Okay, now with that being said,
Depending on where the air flow is most concentrated coming in the engine bay will determine how the clutch fan reacts.
Edit: A body lift changes the flow of air coming into the engine bay. (The radiator core support is lifted along with the body lift. The fan location stays the same.)
In the summer months, the air flow is hotter and flows over the sensor, and the fan runs more.
In the winter months, the air flow is cooler and the fan runs less.
Now with the lifted truck, the air flow path is changed up and does not flow right too the center of the clutch fan. The fan now also operates on ambient temps trapped in the engine bay.
What does this mean? It means the engine will run cooler in the winter & hotter in the summer.
How do you remedy this? With a heavy duty severe clutch fan of course.
The fan will run better as the switch that operates the fan is more sensitive, and the fluids in the body are greater and the fan turns harder/faster.
After all this explaining how a clutch fan and a body lift work together, I have no clue if this is the reason why your rig is running cooler right now.
It could be your Anti-freeze is bad and needs changed out. Do you have sufficient heat?
It could be your t-stat is stuck wide open and wont allow the engine to reach temps. Do you have sufficient heat?
Your temp gauge or temp sensor could be messed up.
Heck if I know, I mean what do I know anyways?

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