ok. if the MIL works, and there is a misfire, the functionality of the pcm should be questioned, but don't go buying a computer just yet. If you have not seen, there are issues with capacitors leaking in the PCM .Not just explorers, and not just fords. the electroylic capacitors used in electronic assembleys 94 and older are just old and started leaking , some in the early 2000's.
opening up the pcm and visually checking for leaks or corroded trace is goood. But thorough testing requires individually testing those capacitors (there are 2 to 3 ). This doesn't mean the pcm can't fail in another way, but it is very unlikeley.
You state you changed Cables, Plugs and Coil (ICM?). Are these all new parts or used swaps?