You can just get a MAF adapter for the stock assembly, and put a cone filter onto that.
I'd suggest using a K&N or S&B brand filter for the best air flow and filtration, the generic brands (Pilot, Spectre, APC, etc.) don't have the same million mile warranty or performance.
KKM sells a bolt-on cone intake kit for the 91-94's, I've had mile a looooong time and it's top quality. It's slightly more expensive than buying a universal MAF adapter and a K&N, but the Explorer-specific fit is worth it to me.
http://www.kustomz.com/054094.html
If you want the custom tubing instead of the stock stuff, you'll need to go to an auto parts store and grab some of the custom intercooler/intake tubing and connectors and make your own. The stock plastic might be better, since it's not metal, and won't retain the heat as much as the aluminum or steel tube, keeping the incoming air cooler. If your stock intake is cracked and leaking, it makes sense to replace it, though it is possible to repair it some with silicone.
Routing depends on the Explorer model year and engine compartment layout. If you have the battery on the very front passenger side, there's not much you can do without relocating it. If the battery is in the middle of the passenger side or on the drivers side, you can locate the air filter behind the headlight, and use some plastic to make a deflector to keep the engine heat away from the filter. Later Explorers also use this setup so it's possible to modify a stock intake or get an aftermarket one and adapt it to your Explorer.