With an in-line filter, don't bother with a nice filter in the trans.
The trans filter has already been purchased and is in hand. Might as well use it.
[/QUOTE]You want the in-line one to catch the crap, not the one in the pan. Why? So you don't have to take a bath in order to change the one in the pan

Same reason for magnets on the in-line, don't put them in the pan.[/QUOTE]
Same thing, already have them in hand. Might as well use them.
Also, I'm going to get a new Dorman pan with a drain plug. Didn't mention that earlier.
[/QUOTE]If I were you, I'd get the in-line in ASAP, doesn't hurt to put it in before the flush.[/QUOTE]
THAT's the item I'm waiting on. Soon as I get it I intend to put it in.
[/QUOTE]It'll actually be better so the new fluid with new detergents flushes whatever crud might be in there, into the in-line.[/QUOTE]
Well since it'll be around 12k miles on the rebuilt, how much crud can really be in there? As I mentioned, this is probably overkill but I'm what the heck.
[/QUOTE]Fill it up with Valvoline MaxLife & you'll be good to go for a long time.[/QUOTE]
I'm going to use Motorcraft Mercon V. Spec'd for the 5r55e and keeps me valid for the 2 year warranty.