sorry no pictures yet but will post them soon, for now with the sunroof open, there are two plastic clips directly in the middle of the sunroof. Carefully unclip those two clips.
Next, Carefully slide the rack backwards making sure it does not bind as the two arms just slide in the track but do not lift off. If you look in the water track there is a raised portion right next to the bottom of the arm, this is where it slides and is held in.
Once the arms have been slid backwards past that hump, carefully slide them outwards away from the sunroof track. (if you break a plastic piece just superglue them back together, there is almost no pressure on them as they only slide so superglue is plenty strong, and its waterproof).
Now take that piece and place it off to the side, look for two vertical lines going up the walls of the water track. This is the outside edges of the plastic drain. I took my permatex windshield silicone and filled these and anywhere else there was a crack, open area, rivet, anything that I thought had the potential to leak.
Once this is dry its just the opposite to put it all back together, just be careful on mine after 8 years of sun the plastic can be kind of brittle. I also took black RTV and filled around the weather strip around the top of the sunroof touching the glass only. To clean up I used denatured alcohol but acetone works just as well.
Hopefully, when you're all done it won't leak anymore, assuming its not the roof rack you should be good to go. Again I'll post pictures hopefully tomorrow, life and work kind of get in the way so I apologize for not posting them sooner.
Good luck to anyone who has a sunroof issue and if anyone ever has any questions please feel free to ask.