Sealing it with that stuff seemed to make my bass hit a little more crisp. I liked it alot better because I think it improved the overall sound quality. If you wanna do it, then go for it. I love experimenting with different elements of a system.
I can't really think of any reason why you'd have to bolt down a box though.. Unless it was built to where the subs are inverted, and the weight of the magnets could somehow tip the box over during acceleration or turning or whatnot. I guess also for the security, but some good dark tint and some "intelligent" bumping (not in parking lots, in your neighborhood, etc) can go a long way.
From my experience, the weight of my subs, coupled with a carpeted box on a carpeted surface, doesn't allow for much movement. Not noisy movement anyway.
If you want to go a cheaper and easier route, get a big heavy duty strip of velcro and lay some down between your box and the carpeting.