Bingo Rob, most people think of turbo kits that cost $5000 on the low side. There are many hundreds of dollars of unseen or unexpected costs, but those exist for any significant power level increase.
The greatest advantage we have these days are the wonderful vehicle PCM's since 1995. The OBDII and newer PCM's can handle almost any power adders. Prior to then any modified engine ran like crap, compared to the same modifications to a later engine. The programming is very important when altering the engine(adding 20%+ power), but now with good planning the stock PCM can give you a wonderfully drivable engine.
Rob, how would any 86-95 Mustang run with aftermarket heads, intake, cam, over 10:1 compression, and 42 pound injectors? They would all be awful on the street, all of them, with any FMU etc. Yet who do we know with exactly that running very well with a bone stock 98 PCM?
Rely on the 96+ superior engine systems, add a decent power adder, and include proper new programming. Done right they will purr like a kitten.