There are several instances when the datalog shows the engine rpm to be zero: 63, 90, 113, 116, 155, 188, 191, and 229 seconds. Did the engine quit and then get restarted at these times? If not, then the crankshaft position sensor could be intermittently malfunctioning or there was a data loss between the OBDII port and the PowerFlash. However, there is continuous ECT and IAT data at those times indicating there was no data loss problem.
I'm going to try to grab these in order here, thank you so much for the information. I'm going to go do the MAF and TPS test this afternoon as well as another data log with speed and a little shorter so its easier to read.
And yes it died a few times and had to be restarted so thats why the RPM's dropped off. It typically won't run for very long unless you use carb cleaner to get it started then massage the throttle to get it to stabilize and once it stabilizes it does alright for idle but once its up to temp if you turn it off, it won't restart. It will spin and not even hit......
The trouble codes that are present right now after the run yesterday are as follows:
P0743
P0760
P0765
P0141
P0161
P1401
The shift solenoids have been present even when the vehicle ran with previous motor. The DCCP or whatever isn't there the SCT tune normally takes care of it as well as the rear O2's for me.
About the MAF it was nothing special just a standard replacement from Advance auto everything bolted back up with nothing seeming to be different, but the problem was there before swapping out with the new MAF.
The fuel injectors were both from 4.0 SOHC, the set that was originally installed came off the running engine that had low oil pressure. I swapped them and all of the sensors off the old motor onto the new LKQ engine despite it already having them (just to make sure since i knew the other engine ran without any problems). Once i started having issues i tested both sets of injectors and just for the sake of trying swapped in the LKQ injectors onto the new LKQ motor.
Fuel pressure is good it has an aftermarket FPR just like the previous engine, it also has a 255lph fuel pump and new screen that was installed last year on the old engine.
The truck has sat since October 2011, i installed a new crank in the old engine since it had major bearing failure and re-installed it in Feb/March of 2012. The engine started and ran perfectly fine revved nice and smooth truck could be moved freely but the oil pressure was 10-15 psi so i didn't want to drive it and ruin the new crankshaft. So i purchased a used engine with 75k from LKQ and installed it around April, i also upgraded transfer cases around that time and had some other work to finish on the truck like rebuilding the LSD etc.. So it didn't do a test start until May. So when it had issues i checked the fuel it looked orangish to me, i changed the fuel filter and so forth but here is a picture of some that i pumped out just to look at.