what kind of shape are the front brakes in?
its possible that you have a caliper that hanging up every so often resulting in the need do a few brake applies to get it to seat against the pad. Make sure the piston pushes back in the bore fairly easily, wheile its pushed back some try to slide the caliper on its mounts, make sure it moves freely and does not **** and hang up, make sure the pads also move freely in the anchor mount. Make sure those pads dont have a crack in them like the rear did, any of this can cause this problem.
Also make sure that the caliper hoses are intact, I have seen the outer layer split, casuing the inner layer to buldge out on a brake apply. And while you are at it, carefully check the condition of all brake lines and hoses, including the one going from the frame to the axle
what shape are your front wheel bearings in?
I have seen a loose wheel bearing cause this too. The loose wheel bearing can cause the rotor to push in the piston in caliper and again, a few brake applies are needed to get it to seat against the pad
As far as blaming the ABS, I doubt that is the issue.
Think about how the abs works. When its not functioning, its just a flow through valve. When it senses brake slip at a wheel, it shuts off and opens a valve to that wheel very quickly. So if it was malfunctioning, it could lock up that wheel, or not allow pressure (fluid flow) at that wheel. Neither of these conditions would cause the pedal to fall to the floor. If anything it would cause a hard pedal and decreased stopping power. The ABS unit has a fail safe built into it, so if it loses power or stops functioning you dont lose your brakes.
The one thing is if there is a valve that hanging up in the locked position, then releases, I suppose that could cause a problem.
The problem with this is, the pedal should still return to the normal positon when the valve releases, not go to the floor.
Sure, you could have air inside the abs unit, that can cause weird things. But since this problem was there before you first changed the master, probably not. Unless you allowed the brake system to become very low at one time. Or the abs unit may have an external leak on the unit itself, I have never seen that but anything is possible on an older vehicle.
Pulling the fuse on the abs circuit is a good idea, its easy enough