By the time I took it into the shop it was clanking so bad I didn't even want to drive it there. It sounded like every time the tire turned someone was smacking the rotor with a hammer. It was that bad. We put her on the lift and I got in and put it into gear while my mechanic friend listened. I thought it had to be the cv axle or a brake but he said he thought it was coming from the prop shaft.
We pulled the calipers and saw no sign anything had been rubbing, put new pads on and put them back together. Then we pulled the propshaft and the end connecting to the transfer case was sloppy and the rubber boot protecting it was torn. I took it for a ride w/o the propshaft and there was no noise. I then filled the end with the torn boot with grease, thinking if it was making the noise it would act as a buffer. We put it back together and went for a twenty mile ride with absolutely no noise.
Personally. I don't think it was the propshaft making the noise. The noise coincided with roughly every revolution of a tire, and the propshaft probably turns a minimum of 20 times per one revolution of a tire. I can't see a cv axle making the kind of noise this was making, and then just going away. If it were something inside the TC or differential I don't think it would just go away.
So basically, the noise is gone and neither of us could pinpoint what was making the noise. If it comes back all I can think to do is to drive it until whatever it is breaks. I'm still sitting here trying to figure out what was making that kind of noise, yet showing nothing.