well done
Pulling your first 4r55e can be a real pita especially with the V6 exhaust right in the way!
There are plenty or tips and tricks that can have that transmission out in half that time, but we can get into that later.
Also you could have pulled the engine and trans together.................
We still have not determined if your 98 engine has one fuel line or two, the fuel lines are on the drivers side below brake booster
The 96 engine will have two fuel lines
the 98 engine has 1 or 2 fuel lines?
The 96 also uses a 4r55e automatic
The 98 uses a 5r55e automatic
Installing the 98 transmission into the 96 truck should work just fine IF your truck is 4x4......................
Is this truck 4x4???
I ask because the 96 has a speed sensor that is required and may not be present in the 98 transmission
You need to answer these questions otherwise you may be getting in pretty deep here.
Return fuel was used from 1986-1998.5
Returnless fuel was used 98+
Return fuel has the pump in the tank feeding 42 psi to the fuel rail, where anything that is needed is used, goes through a vacuum regulator and the remaining fuel over 42 psi is returned to the tank. (two fuel lines, one for return)
Returnless fuel has the pump in the tank feeding 64 psi to the fuel rail, the pressure regulator is mounted in the tank with the pump and the 64+/- psi is delivered to the fuel rail. Nothing is returned to the tank (single fuel line, no return)
So you see the two systems are completely different, different fuel rails, different injectors, different plumbing and different operating pressures
You can make the 98 engine work with the 96 fuel rail and injectors if needed. If they are both return style fuel then its just plug and play
There is a reason why we ask these questions and you need to provide the answers so we can help you with this swap!