Bottom end has less than 5k miles, so don't intend to touch anything there. The heads were mildly ported by my dad back in the 80s, he also installed an Offy intake, Holley 390 carb, headers, and converted to Duraspark Ignition. During the rebuild I added a comp camp and refreshed the heads. I planned to add rocker shaft spacers, but don't recall for sure if I was able to get a set for it or just did it in the '99 Ranger's 4.0L. If I didn't then, I might add them and do the free float rocker mod during the swap since I have access to a lathe now. I'll be under the valve covers anyway for a tuneup and changing them to some cast aluminum covers I picked up second hand many yeares ago.
I might swap the comp cam for the next larger cam. IIRC I ment to order the 241 cam, but either misordered or received the 240 cam instead. I decided at the time that it was probably for the better since the 241 was advertised at 264 duration, .428 lift, and mid rpm gains. The 240 on the other hand was 252 duration and .423 lift and lot-mid rpm performance. Decide that combined with the intake and long tube headers that was better for the truck. With this car I'll probably be running at higher RPM and might benefit from the higher power band. Sould probably look into what cam the Sumbeam Apline V6 guys use since that is similar in size and weight to the car I'm considering. That said it might be more effective to regear the car or do an axle swap since one of those will eventually happen anyway. I'll worry more about that when the time comes.
First I've heard of people using 2.9 hydraulic valve train stuff in a 2.8L. I imagine that would require machine work on the block at a minimum, just not worth it to me. I've heard of 2.9 valves, even a 2.9 crank, but never 2.9 cam and lifters.
If I had to pull the heads I might consider having them professionally ported and 2.9L valves installed while off, but probably not worth it for my purposes. Should be plenty for the car its going into for quite a while. When it dies, or I get tired of it, I'll either go to a 5.0L or a 4 cylinder turbo. Not worried about transmission not being compatible because I'll probably go automatic and paddle shift. Lots of dollars in transmissions, controllers, and parts.