the PA for the mustang would work fine. But its a bit overboard for an unmodified v6. or one where there is no intention of modifying.
I would research local shops, since you are not turning the wrenches and you will have a parts AND labor warranty through them.
When choosing a Transmission shop, price is NOT what to shop for. Warranty, reputation, BBB rating, and lots of positive word of mouth. Ask around the larger, independent automotive services and see who they use. those shops have to warranty the labor for the transmission shops rebuild. So they don't want to do the work twice or more.
Also read up in the various regional Ford enthusiast forums. See who the mustang guys are trusting with their cars.
Another good sign is a trans shop that promotes/supports local race tracks. A sign they are local/community focused and worry about their reputation.
The 5r55's are not an easy transmission to rebuild correctly. Ask questions about the servo bore repair/solution, if they look at you with a blank look, RUN AWAY no matter how good the reputation.
Rob