Do you have the factory amplified sub in the rear? If so, you can do what I did. It was overall a pain the ass figuring everything out as far what colored wires for what, among other things. But, if you do have the factory amplified sub in the back like me then I already did the crap trial and error work and can tell you how to do it relatively easily. Let me know if you need more details, but I'll give the gist of it.
1) The factory sub amp already takes essentially an RCA type input so you can just piggyback off that feed from the HU (signal sounded clean with aftermarket amp/sub)
2) You can hack into this feed right behind the rear seat, so less wires to run up to the HU
3) I'm sure you read/will read about the problem of the "pop" you get if you just straight up piggyback the aftermarket amps remote turn on lead from the HU
3a) The problem is because the difference in remote turn on wire length going to the HU and your amp, the HU turns off first. That's bad because when it turns off it sends a signal spike to your amp and "pops" the sub. An easy solution for this is to go to radioshack, pick up a diode, resistor, and capacitor. Essentially this'll make a short lived battery that when you turn the ignition off, your amp will turn off as usual, but the HU will be kept alive for a little longer from the stored juice in the capacitor it'll be getting. Thus, eliminating the "pop". How much longer? That's up to you based on capacitor/resistor sizing. I played it safe and didn't really care to figure the best sizing and just bought the biggest cap radioshack had for $5. The result? HU stays on for over a minute after the ignition is turned off. No big deal to me, it's jsut second nature for me now to manually turn off the HU when I get out. It'd be easy to pop in a smaller cap, but I spent too many frustrating days goofin around with getting the factory HU/aftermarket amp combo working perfectly that I said "F" it.
If you need more details/pics let me know and I'll gladly help. Well I guess not gladly, but I figure it's the right thing to do since I got so many other useful tips off these forums for repairs and whatnot.
good luck