On the alternator/battery harness connector C139 is the Sport side of the connector, there should be Red/Yellow, Black, Yellow/Light Blue, Black/White, Dark Green/White, Gray/White, possibly Yellow/White, and Light Green/Red wires.
On the Explorer/Mountaineer side of the connector C125 there should be a Black, Gray/White, Yellow/Light Blue, possibly even a Dark Green/White and White/Pink depending on if it had a message center or not in the console of the Explorer.
On the Sport side of that connector C139 the Black, Gray/White, and Yellow/Light Blue all need to match up pin for pin to those on the Explorer/Mountaineer side C125. The Dark Green/White wire on the Sport side of the connector C139 is for the oil pressure and will need removed and pinned to pin 26 of the 42 pin engine connector C110 on the Sport side of the connector.
If there is a Yellow/White wire in the Sport C139 side it will also need removed and pinned to pin 42 of the 42 pin engine connector C110 on the Sport side of that connector it is for the alternator. If there happens to be a Light Green/Red wire as well in C139 it will need removed and pinned to pin 41 of the 42 pin engine connector C110 on the Sport side it is for the charging indicator.
As for the Red/Yellow, and Black/White in C139 those are for the AC high pressure switch and will need to be extended from the AC high pressure switch and added into to the Explorer/Mountaineer side C125 of the alternator/battery harness connector to match the Sport C139 side of the connector.
Of the alternator/battery harness connector the Explorer/Mountaineer side is C125, the Sport side is C139, and on the 42 pin engine connector the Explorer/Mountaineer side is C115, and the Sport side is C110.