As for cycling... Don't worry too much about ride height. Your goal is to use as much of the shock as you can over the entire movement of your suspension. In a perfect world, your shocks should be 90 degrees to the axle at bump but that's not going to happen. On mine, I basically mocked up full bump of the axle/leaf pack. I then put the lower shock mount where I wanted it and with about 3/8" of shock shaft showing I swung the upper mount to where I wanted it. Tacked up my mounts and went to full droop to see if I was limiting my droop at all. From there I kind of adjusted and met in the middle for what I wanted.
Hopefully that makes a little sense? If you find your ride height though is like 2" from full bump or 2" from full droop and it's your shock, not the leaf that's limiting that, you may want to sacrifice some bump for droop or vice versa adjusting your shock mounts.
You're doing the work to do it right though! You'll figure it out... I bet less then a percent of people do this and really, to get the most out of any setup, it's really needed...
If you didn't have space limitations I could explain a pretty easy way to locate your upper mounts but it won't work for us trying to keep the shocks under the cab.
Have fun compressing the shocks and keeping them compressed to figure out your bump location! LOL I just bleed the shock and then recharge it, doesn't look like you have that option though.