I only got the 2.25" dynomax muffler. Should i upgrade to the 2.25" exhaust pipe? both the mid pipe and the end exhaust pipe?
Which 2.25" muffler did you get? Dynomax makes a 2.00" in/2.25" out specifically for the 1993-1994 Explorer, which is way better than the stock 2.00" in/out but still a bottleneck since the crushed 2.00" pipe between the cat and muffler inlet goes down to 1.75" or so at the bends.
If you have the 17731 Dynomax Super Turbo that's a shorter muffler but still 2.25" in/out, that doesn't flow quite as much as the longer 17747 but is still pretty good.
No matter what muffler you choose, the Dynomax 45493 tail pipe will give better flow since it's mandrel-bent (constant diameter).
With the shorter 17731 muffler, you can use the stock Walker 43470 2.25" cat to muffler pipe for a 91-92 4-door if you want a semi-bolt-on DIY install, but you will need to come up with a hanger solution for the back of the muffler as the 93-94 single hanger won't be in the correct position with the 91-92 cat-to-muffler pipe. If you have the longer 17747 muffler you will need to find the 42063 cat-to-muffler pipe for a 91-92 2-door. If you have the 93-94 specific muffler with a 2.00" inlet, you're stuck and can't really do much with the cat-muffler pipe.
Another (possibly better) option is if you can find an exhaust shop that mandrel-bends tubing, they can probably make you the cat-to-muffler pipe in a custom config that lets you use what you have now, then you just add the 2.25" Dynomax tailpipe yourself. If you have a 2.00" muffler inlet it's still going to be a heck of a bottleneck.
I'd also highly suggest using band clamps on the muffler/pipes as well if you aren't already, the standard cheap U-clamps crush the tubing and reduce the diameter as well. Keeping the exhaust tubing round and the same diameter all the way back makes a really big difference in flow and performance.
I didn't think it would make as much difference as it did, even on a stock 4.0L OHV, but 2.25" pipe from the cat to the end with a 2.25" in/out Super Turbo muffler made a BIG difference in acceleration, even just in daily driving from 0-3000 RPM. I'm pretty sure it makes a big difference from 3000-redline as well, since that's when there's even more exhaust volume and higher flow.
You also don't want the exhaust to be too much of a bottleneck since it can burst and fail spectacularly on the strip. It'll also be worth it for both safety and saving yourself the embarassment of holding everything up because the exhaust winds up going all over the place.