hmm moving the tank back might work, you may also be able to move it over a hair, I would plan on dropping the tank to modify these things, not full of fuel! If you are going to work on it clean it and fill it with water, measure in the truck, modify out of the truck.
fuel lines from a 4 door should solve the extension problem
if you are going to under the cargo area like a BII then maybe BII lines?? of FSB lines?
Custom lines are not too difficult either, but $$$
I would not be worried about hurting a rear mounted tank too bad, as long as it is tucked up a bit, my BII skid plate has seen more then its fair share of 2-3' drops right off a ledge, bumper first, then skid hopefully! Its dented, but still protecting the tank, a tougher skid then the 88 factory piece would be adequate for even the hardest hits, wheelers have had rear mounted tanks forever.