Looking good. Tbh I don't use any timing tools on the 5.4 myself anymore. If you have the keyway on the crank at 12:00, usually you can take the chains off without the cams flopping. Since you have the tools you don't have to worry though. Make sure you replace the oil filter housing gasket if you haven't already, major common leak point. Make sure you lay out the guides as they come off. The tensioner guides look the same but they arnt, they are side specific. I also hit the timing marks with paint marker, makes it easier to see then lining things up.
Engine does look really good on the inside, no sludge / barely any tarnish. I'm sure you'll find the tensioner gaskets blown but the chain guides are all there. Honestly I'd skip doing the oil pump(since you have to remove oil pan on the ground). Main reason you pull the pan is because the plastic debris will clog up the pickup tube. Your's looks all there, probably just blown out tensioners is all your hearing.